Resume

Summary

Data Science Engineer with a PharmD and CDC Public Health Informatics Fellowship background, working across real-world evidence (RWE) analytics, clinical data interoperability, and secondary data harmonization (administrative claims, electronic health records) for pharma, healthcare, and federal public health stakeholders. Authors statistical analysis plans (SAPs), builds OMOP CDM- and FHIR-based data models, and maps clinical data to SNOMED CT, RxNorm, and LOINC. Certified in HL7 v2, CDA R2, and FHIR. Has established team-wide QA/validation standards for AI-assisted analytics workflows, pairing rigorous spec-writing and terminology governance with epidemiological framing and output validation.

Stack: OMOP CDM, SNOMED CT, RxNorm, FHIR, HL7 v2/CDA R2, LOINC, R, Python, SQL, Airflow, Neo4j/Cypher, Azure (Data Factory, Databricks, Synapse)

Technical Skills

Epidemiology & Observational Research: Observational study design, cohort/inclusion-exclusion criteria definition, disease and outcome characterization, IRB-approved protocol design

Real-World Data & Interoperability: Data harmonization, secondary data sources (administrative claims, electronic health records), OMOP CDM, SNOMED CT, RxNorm, LOINC, ICD9/10, HL7 v2, CDA R2 (certified), FHIR, USCDI/USCDI+, PHIN-VAD, HL7/FHIR implementation guide (IG) contributions

Data Engineering: R, Python, SQL, Airflow, ETL/ELT pipeline design, Neo4j/Cypher, data validation & QA, pipeline architecture, version control

Cloud & Tools: Azure (Data Factory, Databricks, Synapse, DevOps, ML Service), pandas, numpy, sklearn, PySpark, R Shiny

Analytics & Delivery: Statistical analysis plans (SAP), data dictionaries, client-facing reporting, AI-assisted development (Cursor, OpenCode; spec-writing, validation-driven review)

Experience

Cercle AIAugust 2025 – Present
Data Science EngineerRemote
  • Harmonized multi-source secondary data (2-4 administrative claims and EHR feeds, ~2M patient records, multi-TB scale) into an OMOP CDM-style data model, mapping normalized (3NF) clinical fields to SNOMED CT, RxNorm, and LOINC; used AI-assisted development (Cursor, OpenCode) while owning spec-writing and output validation
  • Created the metadata and data dictionary managing terminology and vocabulary mappings across the database, supporting consistent SNOMED CT, RxNorm, and LOINC usage system-wide
  • Serve as primary client-facing data lead for the firm's largest (highest-revenue) pharma client, meeting weekly with clinical trial study designers, epidemiologists, clinical managers, and biostatisticians; client subsequently extended the RWD analysis contract
  • Resolved a previously strained client relationship by introducing a standardized SAP template and client-facing data dictionary, since adopted company-wide; reduced error rates 50%+ and improved turnaround time 15%
  • Review SAPs and RWD analyses authored by fellow team members (4 to date), ensuring methodological consistency and QA rigor prior to client delivery
  • Designed and maintain Neo4j/Cypher graph models linking patient-drug relationships across ~2M patients; modeled 180,000+ IUI cycles linked to pregnancy and medication outcomes for observational IUI/IVF treatment-outcome research
  • Authored 5 statistical analysis plans (SAPs), structuring multi-section deliverables (up to 7 sections per project), improving project completion rate 60%
  • Established team-wide QA/validation standards via a SKILL.md repository for Cursor/OpenCode, adopted by other engineers, reducing errors 20% and cutting task completion time 40%
  • Co-authored (3rd of 9 authors) "Real-World Insights on Controlled Ovarian Stimulation for IVF/ICSI: Data from a Large Fertility EMR Database in the US (2010-2024)," poster presentation, ISPOR 2026, Philadelphia, PA
Booz Allen HamiltonJuly 2024 – June 2025
Senior Consultant – Health Data EngineerBethesda, MD
  • Configured and maintained Microsoft FHIR Server integrations, parsing FHIR resources into a relational structure across 65k+ patient records via an automated harmonization pipeline (MS Fabric, PySpark, OMOP CDM), cutting processing time 40%
  • Served as data governance lead for a CDC-contracted project; created data models and metadata standards guiding engineering teams' product design decisions, and audited databases for validity and structural integrity
  • Designed a data governance and validation workflow standardizing external source integration, cutting integration time from 3 months to 1 month
  • Configured FHIR API bulk import of 10k patient records, improving import time 10-fold
  • Built semantic metadata models spanning 4 infectious disease domains using GENEPIO ontologies, ingested into CDC's OAMD system
  • Engineered a weekly-refreshed RAG pipeline (Azure ML) vectorizing 5GB of policy text for an AI agent, applying prompt engineering to reduce hallucination
  • Created a GenAI RAG recommendation engine (cosine similarity, Azure AI Search) surfacing insights from regulatory/biomedical literature, awarded $10,000 from the Fast Prototyping Fund
  • Built and demoed a Streamlit/GPT-4 recommendation bot for an HHS tech-innovation project proposal, presented to the leadership team overseeing the government contract
NIOSH, Centers for Disease Control and PreventionJuly 2023 – July 2024
Health Informatics Scientist – Division of Field Studies and EngineeringCincinnati, OH
  • Served as data architect for NIOSH's Adult Blood Lead Epidemiology Surveillance (ABLES) program, directing a contract engineer and owning the technical roadmap for migrating ABLES to Azure cloud infrastructure, cutting cloud costs 70% and reducing data refresh turnaround from 3 months to as fast as 1 week
  • Led the OMOP CDM adoption initiative, harmonizing normalized clinical data to SNOMED CT, RxNorm, and LOINC, and led cross-division data-standard harmonization working sessions for DFSE
  • Contributed to FHIR implementation guide development and maintained LOINC code sets, the PHIN-VAD value set, and the Message Mapping Guide
  • Served as subject matter expert in CDC's OHDSI-Vulcan-OMOP work group, contributing to the International Patient Access Implementation Guide (IPA IG)
  • Coordinated multi-state partner onboarding to the SAMS/SDX health information exchange platform
  • Authored NORA Fund proposal integrating NIOSH auto-coding with EHR data, accepted, $30,000 granted
  • Designed cloud data architecture (Azure Data Factory, Databricks Unity Catalog) and led FHIR API integration/USCDI+ research resulting in accepted submissions to USCDI v3 and USCDI+ v2, cutting state health department ETL/ingestion time from 6 months to 1 week
  • Harmonized occupational health data across states with inconsistent units, fields, and coding systems to support ML model development for occupational health analytics
NCEZID, Centers for Disease Control and PreventionJuly 2021 – June 2023
Public Health Informatics Fellow – Division of Global Migration and HealthAtlanta, GA
  • Built statistical compartmental epidemiological models simulating global COVID-19 spread and trend trajectories, informing forecasting and response strategy
  • Led manual data labeling (2M tweets, 3-person team) to build a misinformation gold-standard dataset; benchmarked Random Forest against BERT/RoBERTa NLP classifiers (best model: 89% F1) via Databricks fine-tuning, published in an internal report used by CDC leadership
  • Applied BERTopic topic modeling and built a no/low-code R Shiny interface enabling CDC-wide users to query travel data without writing SQL, cutting policy review time from 3 months to 1 month
  • Engineered a real-time ELT pipeline (Azure Data Factory, Synapse) ingesting 1TB+ per batch of travel and pandemic surveillance data every 3-7 days, feeding COVID-19 emergency response reports delivered to HHS and the White House emergency health response team
  • Synthesized 5-disease forecasting and 15+ surveillance trend-analysis reports informing COVID, Monkeypox, and Ebola response
  • Parsed and harmonized terabyte-scale outpatient antibiotics utilization data from HealthVerity's long-term care EHR database into a normalized (3NF) structure for COVID-era antibiotic stewardship reporting
  • Published a white paper on USCDI and EHR data standardization and briefed CDC leadership, strengthening data elements accepted into USCDI v4
  • Standardized travel data capture elements for USCDI+, coordinating with HHS ONC and CMS; submissions accepted in USCDI+ v1 and v2
University of Virginia Medical CenterFeb 2018 – Jan 2021
Clinical Pharmacy InternCharlottesville, VA
  • Designed the UI blueprint for a new EPIC Ambulatory Care patient admission page, adopted clinic-wide as the standard ambulatory care module
  • Reviewed medication prescriptions and supported therapy management, improving vaccination rate 150% (2019–2020)
  • Co-developed an IRB-approved observational study protocol on inhaled aminoglycoside antibiotic use in outpatient cystic fibrosis patients (~7,000 patient records); findings informed a published study and an internal practice guideline
Early-Career Pharmacy Informatics ExternshipsJan – Apr 2021
Pharmacy & Pharmaceutical Informatics Intern — INOVA Medical Center, FDA, Kit CheckVA / MD
  • Standardized drug administration routes in the EPIC Willow pharmacy EHR environment and built Tableau/SlicerDicer dashboards, reducing non-standard routes 15% (INOVA Medical Center)
  • Analyzed 5 years of Medicare Part D claims data to characterize biologics pricing trends and projected insurance-coverage impact (FDA)
  • Built an automated NDC data-cleaning pipeline against RxNorm and First Databank drug data, and designed a drug-shortage data capture method for a medication diversion detection program (Kit Check)

Education & Certifications

CDC Public Health Informatics Fellowship2021–2023

2-year, doctoral-level appointment; travel-data epidemiology & emergency response focus

VCU Medical College of Virginia2021

Doctor of Pharmacy (PharmD), Emphasis in Informatics & Research

Penn State University2015

BS, Biochemistry

HL7 v2.x, CDA R2 & FHIR Foundation Certification2022
Certified Scrum Master (CSM)2023

Publications & Presentations

Yu M, Barletta K, Lan K, Field S, Merono C, Goig D, Moegelmose S, Chuderland Ben Arie D, Hariton E, Zhou W. Real-World Insights on Controlled Ovarian Stimulation for IVF/ICSI: Data from a Large Fertility EMR Database in the US (2010-2024). Poster presented at ISPOR 2026; May 2026; Philadelphia, PA.

Seged S, Lan K, Zhan S, Eloso J, Biggers B, El Kalach R. The Public Health Informatics Fellowship Program: Training Pharmacists as Data Detectives. J Am Pharm Assoc. 2025;65(1):102216.

Katebi V, Panacci A, O'Sullivan T, Lan K, Morris J. COVID-19 Vaccine Misinformation Detection Using Classification Models in Cruise-Related Tweets. Internal CDC Report. Accepted.

Chaker S, Henry JA, Hung Y-C, et al. The Kenya Surgical Capacity Study: An Audit of Surgical Equipment/Infrastructure in Level 4 Public Hospitals. Annals of African Surgery. 2025;22(1):4-12.

Hung Y-C, Henry JA, Chaker SC, Saad M, Slater ED, Madiraju SK, Waiguru E, Mwai P, Jani P, Lan K, Nthumba P. The Kenya Surgical Capacity Study: An Audit of Surgical Workforce in Level Four Hospitals (Part I). J Surg Res. D-24-00004.

Lan K, Baubly E. DataMosaic Platform Development. Poster/oral presentation, NCEZID, Division of Global Migration and Quarantine, Atlanta, GA, 2022.

Lan K, Baubly E. Data Mosaic – SQL-based R Shiny UI Querying Web Application. CDC Public Health Informatics Fellowship Capstone Abstract Presentation, June 2023.

Lan K, Wojno A. USCDI Standard on Travel Data Elements Application and Capturing. CDC NCEZID News Update, March 2023.

Lan K, Baubly E. Global Travel Order COVID Travel Assessment Page. CDC, November 2021.

Bark A, Lan K. Do Pharmacists Speak Well of Pharmacy? A Word Sentiment Analysis of Pharmacy Subreddits. The Happy PharmD, September 2020.

Lan K, Jian YJ, Chang JH, Yang CM. Retrospective Analysis on Drug Resistance of Clonal Strain Isolated from Emergency Room. Interscience Conference on Infection and Chemotherapy, Korean Society of Infectious Diseases, Seoul, Korea, 2013.

Lan K, Vu D. AnyWear VR Startup Product Pitch Deck Competition. Virginia Commonwealth University Da Vinci Center, Richmond, VA, 2018.